Hey,
I have a problem with the Media Encoder. In there I can't use or alter some of the presets (broadcast: MPEG2, MXF OP1a, Camera: HDV, DVD & Blu-ray: DVD). They show up but I can't twirl down the arrow. In Premiere Pro I can choose those settings (as shown in the 1st screenshot) but they won't come over to the Media Encoder.
I use the Creative Cloud and installed AFX and Audition before the Premiere Pro Family.
The Adobe Media Encoder CS6 (6.0.1) update is available. Install this update.
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