Is there a solution to prevent InDesign from packaging DCS EPS files into separate folders?
We recenly upgraded our Mac environment to OS X 10.6.8 and 10.7 and it appears to occur within InDesign CS4-CS6 on either Mac OS version. Other standard file formats, such as JPEG, TIFF or EPS all appear to collect normally.
If it’s repeatable, then report it here: https://www.adobe.com/cfusion/mmform/index.cfm?name=wishform
I wouldn’t count on a fix any time soon, though.