My business web site has a usual Templates directory in the root of the master site. Then, each client is in a sub-directory with their own templates for their own unique site. When I am working on a particular client, I define their site as a separate site and running link checker at the client / subdirectory level works fine - DW does not know or care in this case that it is part of a larger site.
However, when I run link check on the main site, all the client sub-directory templates and library items show as bad linkes. Wouldn't be such a problem except it generates about 800 or so "errors" that I have to scan through for real issues.
I assume this is because the client template path is relative to root with a /template in each page? Is there any way to avoid this?