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I encountered a mystery surrounding several missing menu options in one of my Flash Builder workspaces recently. I wanted to create a new skin for a List control so I right-clicked on my skins folder and looked for the New MXML Skin option. And I looked. And I looked some more. But it wasn't there.
I happened to have another copy of Flash Builder open in another workspace so I gave it a try in that project. Sure enough, the New MXML Skin option was there along with a couple of other options that were missing in the first workspace. Here's a list of the menu options missing from the File --> New menu in this workspace:
I'm not sure why those menu options went missing but I was able to work around it by recreating the workspace. I simply created a new workspace, copied all of the projects into the new workspace folder and then imported all of my projects into the new folder. I then had a full set of menu items.
I poked around a bit trying to figure out what went wrong but wasn't able to find a conclusive answer. My best guess is that it has something to do with the fact that I was previously running the Flex 4 beta and that's when I created the workspace with the problem. I compared the workspace .metadata folder and, curiously, there were 25 folders inside the .plugins folder for the problem workspace but only 12 for the newly created one.
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This is an eclipse thingy, menus get cached in the workspace' metadata. If you try using a newer build of Flash Builder with a workspace from the previous version, you may notice this behavior.
The workaround is to create a new workspace and import all projects there.
-mayank
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You can also try window -> reset perspective.
Thanks
-Sunil