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I can see the generated project .htm files but where or what is the generated index file.
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If you mean an 'index.htm' file, then that is your project.htm, specified in the Webhelp SSL "Select Output Folder and Start Page" field (sorry, using RH6 at the moment, so RH7 and 8 might have slightly different names).
If you mean the index, I believe it is split up in the Robohelp generated files - I think in the whi*.htm files in whdata.
Amebr