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Example: How can I find EPS between Illustrator and WMF !
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Since not every placed EPS is a MathType EPS and not every placed WMF is a MathType WMF you have to inspect the code of the placed file and have to see, if you find something there that is associated with MathType only.
With EPS look for the PostScript code line that begins with %%Creator perhaps.
Or do you have a unique file naming convention for MathType contents that is placed?
Then you could look for that.
Regards,
Uwe