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Clean the Media Cache Database (Edit/Preferences/Media), close PR, reopen PR, open your project and let indexing, conforming and peak file generation finish before you start to edit. Maybe that helps and there are no downsides to it.
It did not do any good, however I found a folder with Media Cache files, on another internal drive that I had before my system disc crashed. As far as I know I did not change the location of the media cache since then and that folder contains .cfa and .pek files for what seems to be all the audio and video files for my project.
Can there be some error here? Can I clear it some how and recreate it from the original source files?
Just delete the files. PP will automatically recreate the ones it needs when you open the project.
Yes! It worked. Thanks a bunch guys.