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our programs specs requires 720x486
That's unfortunate, because that is almost certainly the cause of the green line.
MPEG codecs work best when the dimensions are evenly divisible by 8. I bet if you went to 488 or 480, that line would go away.
Ok, I tried cropping the sides and I get the same results except then I have black verticle lines on both sides. I also tried nesting the sequence into a sequence that is 486... and there's no difference once it's rendered.
Rendering at 488 did actually work to get rid of the green line so I'll ask the station if they would accept it that way. I'll let you know.