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Seems like printer specific issue ?
can you check making the PDF of the file from InDesign and then printing the PDF.
Also , does you PDF shows the same issue as when printing?
Thank you for trying to help.
I tried the exporting to pdf and then printing and I still end up with 1" printed margins. It only seems to do this when I select "print on both sides of the paper". If I just print one-sided there is not a problem.
It will be near impossible to get the alignment correct on a 2 sided sheet of paper using a standard inkjet/laser printer. Too many factors come in to play. It will be close to correct on one side but then the printer has to feed the paper back through and print again - if it feeds it back a little off then you will notice.
See this thread that covered a similar issue before: http://forums.adobe.com/message/4618254#4618254 .
Yes, it must just be the printer.