I'm using cs6 by the way.
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Trash the prefs in Users:You:Preferences:Adobe:After Effects etc. Also flush the cache. And make sure you're running the latest 11.0.2 update. It specifically addresses Retina MBPs and some of those RED issues.
Thanks for the advice, I just flushed my cache. Where exactly are the preferences located? In my Users/Me/ folder there is no Library subdirectory and no preferences either. Would it be in my main HD Library under preferences?
In finder use the Go menu and hold down the Option key to reveal the Library. You can also open up preferences and click Reveal Preferences in Finder at the bottom of the General page. Another option is to hold down the Alt/Option + Ctrl/Cmnd + Shift When you launch AE and it will give you the option to delete your preferences file. I'm replying to this post from my iPhone, I'm not really sure about the shift key. Give it a try with, and if that doesn't work without.