Have you tried adding the files to Encore and checking there, despite the difference?
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Jim...Yes! I just did that this morning in frustration and by golly, they are both the same length. There is a note in the Project window after I copy to "Timeline" that says the video file is unencoded! Wierd! Another problem popped up in that the video and audio files are in different sequences in Encore. I cannot get them to play together. One will play and not the other...? I can't seem to drag them to the same sequence.
But, at least they are the same length! Mysteries in this HD business.
My guru suggested that I go back to Premiere and encode only the video file, which is what I'm doing right now...or in another 11 hours, I will have!