you edit your html file to embed multiple copies of your swf.
it's generally easier to control the layout if you use swfobject (but you can just copy the code published by flash pro) to embed the swf.
I'm actually embedding them multiple times in a PDF, not an HTML file. When I am embedding over 50 of these small files, it gets too bogged down to run smoothly.
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create a new swf that loads your current swf.
if you're using as3, use 50+ different loaders to load 50+ copies of your current swf.