Did you try starting server using installed batch file located at "Author\crx-quickstart\server\server.bat" because cq-author-4502.jar normally we use for first time installation (dont want to go in more detail about execution) whereas the server.bat will start the installed application.
If I run using Author\crx-quickstart\server\server.bat, it works properly but fails when i use cq-author-4502.jar. But I am posting this problem because incase of publisher cq-publish-4503.jar even during the first time, it went directly to c:\windows\system32\crx-quickstart, so all the startup scripts for publisher created over there. Kindly suggest how to change this default behavior.
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Refer  OR I guess with crx hotfix 126.96.36.199 Or above you can configure in property file.