Between my movie clips I use the shortcut key "CTRL" - "D" to paste the Video Transitions.
Premiere Pro CS5 does not make it the same every time.
Sometimes the transition located at the beginning or end of a movie clip ("1" on the attached picture) and other times in between the 2 movie clips ("2" on the attached picture)
Would like to Transitions are always made as shown at "2", but how?
You are missing 'handles' on the first clip. If there is insufficient material on either side of the transition, the transition is moved to the side that has sufficient material without repeating frames.
The problem with example 1's Clip is that it does not have any Handles - there are no Frames in front of that In Point (see the little "triangle" in its Audio, where it's still visible). This article goes into more detail on Handles with Transitions: http://forums.adobe.com/message/3727485#3727485
Adjust your In Point, to provide adequate Handles, on adjoining Clips, and then your Transitions will go between both.