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When you change the publish target, make sure you click the Save button in the Publish Settings dialog. That should retain your changes.
thanks for the reply. I've double checked with a new file that I'm selecting the 'save' button in publish settings dialogue but I still get the same reset.
Oh dear - looks like a Windows-only bug. Thanks for the report, Patrick!
No problem, good luck with the fix.
Any progress on a solution to this problem yet?
Joe, I can confirm this issue, as well (Win 8.1 / 64bit).
Patrick, I guess for the interim, a workaround is to keep the default settings - publishing to a sub-folder under the project parent folder.
We're aware of the issue and have addressed it in the next version of Animate.