Updating my own post, but I can rule out the Calibrated software, this is definitely an adobe issue. Something in the render from Adobe is causing the MOV file wrapper to display wrong. This must be a bug ?
Replying to myself again, but I went back and double checked that I had transfered all folders/files from 12.0 to 12.1 and I did, so I'm sure what or why it's doing this when rendering out with DVCpro HD. Certainly there must be a file I can tweak to fix this or a preference I can alter ?
This still doesn't work correctly, anyone have any thought as to why ?
Have you tried updating to 12.2.0?
Any particular reason that you are rendering back to DVCPro HD? That's a non square pixel format designed for cameras not delivery of product, it is not suitable for DI (digital intermediates) or delivery to anything standard. I would do all my work in a standard HD 1920 X 1080 comp and render my DI and Delivery product to that frame size. AE will automatically adjust your DVCPro HD footage.
The only reason that I can think of to render to DVCProHD is to copy your footage back to tape or to storage cards to playback on a camera or DVCProHD deck, but if you have a capture card that you are using to output to tape, and I see you do, then your system will work with standard HD files just fine.
As far as the QT wrapper being broken, if you must render back to DVCPro HD the try the Adobe Media Encoder. It does a better job compressing things than the Render Cue.
As a last thought, do what Szalam suggestes, update.
Yes I know it's *** backwards rendering to that, but... the reason, I work in broadcast and as painful as it is, and trust me it's painful, we have to send some graphics or News premix back down to the newsroom and they edit with grassvalley and it will only take DVCPro HD. It's kinda out of my hands situation (if you know what I mean). I just make it and send it and worry about things I can control..lol.
I thought it was fixed in this last update but it wasn't it. And media encoder for whatever reason is spitting out the wrong header info for the quicktime as well.... I'm out of ideas on a fix. Actually I'd rather render from media encoder anyway if that would work. Like i mentioned before, it was all working perfect until the 12.1 update, then something changed it how quicktime is reading those files and those files only.
Thanks for the help, much appreciated.