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With regard to the second issue, you should be able to to do a refresh to have the latest compiled SWF load. Otherwise, yes, you;d have to close the browser and then click Run.
We unfortunately didn't have time in this release to build a good automatic code formatting feature. We're aware it is a popular request and will certainly be taking a close look at it for our next version. This is being tracked at https://bugs.adobe.com/jira/browse/FB-21.
Your second question I'm assuming is about AIR applications. Unfortunately, right now you have to manually close the app before running it again. This is https://bugs.adobe.com/jira/browse/FB-9660. If you're running an application in the browser or the standalone Flash player, launching a second time should open a new tab or window.
We plan to enable voting soon for Deferred bugs like the two listed above, so be sure to check back and put in your votes if these issues are important to you!
Hope that helps,
thank for the response, and I'm glad to know that Adobe team will build and fix those capabilities in the future.