The older build of Edge seems to have no problems with packaging up animations that are compatible with Muse's scroll FX. The latest version appears to have an issue, where the animations can't be controlled by scroll FX. As well, when attempting to export into HTML with scroll FX, the Edge animation will show up as a graphical glitch. I'm getting the same results with Mac as well as Windows versions, so that should rule out hardware or OS related problems. Has anyone else had this happen to them?
Muse CC 2014.2 works fine, the problem here is edge animate cc 2014.1. The 2014.1 release of edge animate contains a lof of bugs.
Try the edge animate CC 2014 release with Muse CC 2014.2. If you already deleted the 2014 version of edge animate CC you can
download it here HTML-animatie | Gratis proefversie Adobe Edge Animate CC downloaden > under the version tab select > 2014>
Let me know if this works for you.