Embedding it in what?
We are looking at the InDesign document in your screenshot, you don't expect to see it play there I hope. You will need to export to, yes maybe Flash and bring that back in if you want to export to iPDF, we have no clue now what you want to do. In short: what Bob asked: Embedding in what?
I try to create a PDF document in indesign with embeded youtube movie in HTML5
isi it possible?