You should NEVER work with manual page breaks. Use a proper paragraph style instead.
You should NEVER use multiple paragraph breaks. Set up your paragraph styles correctly.
NEVER work without paragraph styles.
I'm moving this to the InDesign EPUB forum.
I NEVER said I was not using paragraph styles. But thanks for the cautionary comments anyway.
I am using proper paragraph style sheets and I just figured out the problem was that I did not check the Split document check box under Export tagging in my Paragraph styles.
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Here's what I did and it seems to have worked:
Open the paragraph style and go to Export Tagging and check Split Document (epub only). Then when you export (assuming you are using reflowable) under General>Split Document check Based on Paragraph Style Export Tags.
OMG.....have been looking for 3 days how to figure this out!!!! FINALLY!!