Check the text frame insets.
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What is going on??
The most "popular" reasons are:
1. Same paragraph style names, different definitions
2. Same character style names, different definitions
Check, if the [Basic Paragraph Style] is defined differently with the document you are pasting in.
We recently had a thread on an similar issue:
Have you checked the basic and advanced character settings in both docs to make sure they are the same?
Different settings give you different results.