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Not exactly in the way you want, but you could hide combinations of layers and export PNGs.
Thanks, I'll give it a shot, probably the best solution i'll get I think
You can use the new SWF archive exporter introduced in Animate CC.
It exports all the layers as independent swfs as a zip file, which can be extracted and imported in AE as separate layers.
Thank you, I wasn't aware of this as I was running an older version of Animate, just updated then and it worked.