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The Muse update shouldn't have affected your folders as it has no direct link with them.
Have you checked your CC folders on the Creative Cloud site as well as your local folders?
This isn't an issue with Muse or its updates.
The file might have been misplaced or deleted.
Didn't you have a backup copy on your hard drive?
Thanks David, I found it, was my fault I saved it with a wrong name..
And thank you Ankush, found it. just saved it with a wrong name..