May I know which version of Lightroom are you using?
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Can you please show the file details (date/time) for the photos in the final directory?
I think you may be caught in one of Lightroom quagmires regarding missing JPEG sidecars from a original RAW+JPEG import:
It looks like you may have imported RAW files with matching JPEG copies originally in the same folder (shown as the DNG+JPEG and ARW+JPEG text in the thumbnails).
At some point the JPEG copies with same timestamp as the RAW files may have been deleted and since replaced or overwritten with exported files using same name? But these files will have different date/time so LR will show the "+JPEG" file paired with the RAW as missing.
I cannot recall just now how it is possible to separate the photos from a RAW+JPEG import into one that is RAW only after the fact so that the synchronization will work correctly.
Apologies to all. I thought I would recieve an email notification if sombody replied which did not happen. It appears that since this post the issue of the missing images has corrected itself; I no longer see the "Photos Missing'.
Thanks you for replying.