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Could you share the puppet heirachy? That could help.
i am not sure if helpful in this case, but you might like to also skim through https://extra-ordinary.tv/2018/04/21/debugging-character-animator-eyess/
I would recommend reading that blog I sent you. For example, you have layers called “Right Pupil” nested inside “Right Pupil”. This can cause strange tagging hierarchies that have played up at times for me. So I would rename those nested layers. I would then go through and check all the tags on the layers (too hard to share via screenshot). I am guessing some of the tags are wrong, which can lead to exactly the problem you are having.
The blog post I shared is really what I go through and check myself. For example, your Left Eye and Right Eye are not independent - I would suggest turning that on as well.
Or if you want to YOLO, turn on independence for Left Eye and Right Eye and remove any tags from the nested Left/Right Pupil layers and see how that goes. (Then read the blog post! ;-)
Will do! Thank you for your time and advice!