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Yes it will.
Just remember that Quicktime files work OK on a PC, but AVI files not so much on a Mac.
I would not recommend going back and forth, but it can be done.
Formats like DVCPRO HD and XDCAM HD are ingested in their native file containers. They are not Quicktime or AVI, and they should work perfectly across platforms. I have not tried HDV on the Windows side, is it AVI or an MPEG transport stream?
HDV is MPEG2.
Premiere projects can be read either way, but Encore projects cannot.