I'm using a JVC BR-DV600U deck to capture footage into Premiere Pro. The problem is that I've logged a bunch of clips and when I tell it to batch capture as Premiere is telling the deck to seek for the time code it rewinds past the starting point, then fast forwards past it, then rewinds back, then forward, then back, etc. until it finally gives up and aborts all of the captures.
So far, I've had to do every single clip individually which completely negates the reason for batch capture and is a huge waste of my time.
I have the same exact problem with batch capturing using my Sony M15 deck, and, like you, I resort to batch capturing using my Sony V1U camera with no problems. Why does Premiere not like to play nice with the decks?!