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These things point to installs that went wrong and didn't overwrite data or the pref file was not updated correctly on program exit, possibly due to a crash. In your case it seems it has duplicated the output format lists. Try to delete the prefs and see if it goes away. There's also a similar XML list for MediaCore formats, which may need to be kileld as well.
Thanks for the suggestion - I had tried trashing prefs but not the XML .. but it's still messed up. I can live with it - I mean, it's not like a crash that keeps me from working!
Mmh, still strange. Even if it looks harmless, it may cause issues eventually, if AE attempts to also load a specific output module twice. I'd keep an eye out for it. I forgot to mention that some of these modules also are hooked in the registry, so may be that's where this nonsense comes from - identical settings under different keys or redundant user-specific vs. systemwide keys.