It seems to me that the Code Hyperlinking functionality is basically limited to imports/object creations and includes that occur within that particular template or template chain.
If you are using an object factory pattern such as the ones found in popular framework such as ColdBox, MachII etc to create your objects, include UDFs, implement Dependency Injection with ColdBox or Lightwire, etc. then this will not work for you. Am I correct?
Am I missing some way in which you can tell the editor where the CFC is located and have it remember and start "learning" the app framework you are working in?