you don't need to change the project name.
By default, default application name in project is the same as a project name. But you can create another application and set it as default.
So project name affected only to the html and swf files names and it's very easy to rename them if you need it on deploy.
Thank you for the information. How do I rename the html and swf files, when I deploy the site?
I appreciate your help.
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Just rename the wrapper HTML file if necessary. You don't need to rename the SWF file and should not rename it if you will use the auto-generated wrapper HTML file, as it refers to the SWF by name.
All you need to access the deployed Flex app is a URL to the HTML wrapper file, so it could be http://www.myCompany.com/myFlexApps/project.html
or you could rename the HTML file to index.html if it is the default page for a folder on your web site. It's up to you.
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html file - only rename without any dependenceis to other files.
If you also want to rename swf file, you should rename it and rename it in html file.
There are three places: just find a string "your_old_swf_file_name.swf" (two places) and
If you really want to rename swf - it's easier to rename application.
Thank you Natasha and Greg!