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The window created first should be on the bottom, and each subsequent window should be stacked above that. Are you sure you are not creating the second window first?
Thanks for your reply. It made me investigate a little further. The Master window is of the palette type. The Working window was of the window type. Why that should make any difference in how they are stacked, I'm not sure. But I changed the Working window to the palette type and now it appears on top of the Master window, that is the second created palette appears on top of the first created palette.
So yes, the Master is created first. The Working is called up from a script that is invoked by a button on the Master window, so it has to be second.
Yes. That makes a lot of sense.
Palettes are always above windows, and dialogs are above palettes.