Thanks for your response. Im a doofus, I just need to change the html in order for the .swf to appear with a transparent background. Thanks for your help, I appreciate it!
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There is no Publish Settings command in After Effects.
Here are instructions for exporting a SWF file:
Here's a link to a page that has a information on other Flash-related formats:
Here's a page with lots of resource for working with After Effects and Flash together:
But, mostly, I still think that you should start here:
It looks like we were typing at the same time. You're not a doofus. You're just new to After Effects.
Thanks for your help guys.
I just needed to change 2 things in the html for the background to appear transparent, far easier than I was making it.