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Hi GB Austin and welcome to the RH Community. Command line compilation came in with version 6 last January. Do you have this version?
Yes, we have version 6.
What you need to do is set up a Single Source Layout (SSL) to build with the conditional tags. If you are not sure how to do this, let me know. Let's assume you have a SSL that can do this and it is called "General". To build it using Command Line Compilation, use the following command:
rhcl [address of your project's xpj file] -l "General" -o [address of the output directory]
The -l (lower case L) tells the caommand line to use this SSL. If you leave -l "General" out it will compile your Primary Layout instead. If you leave out the -o and the address, the output chm file will be placed in the current folder. So the basic command is just:
rhcl [address of your project's xpj file]
I hope this has helped,