I just tried to export an fxg project from Fireworks into Catalyst as a test, and it failed to bring in any of the fonts that I had checked in with Font Agent Pro. Other programs like Fireworks, Photoshop and Illustrator seem to work well with FAP, but Catalyst has failed. Please let me know if you have any solutions or if this is just a known problem.
Wonder if it is the type of font? Only OpenType and True Type fonts are supported with the Flash Player, and thus these are the only font formats supported by Catalyst.