For what you are doing, I would really recommend using Adobe Encore CS5 instead of Catalyst.
Encore can handle up-to 99 timelines and can export a complete Flash user experience from within it's environment.
You can program timeline end actions, transitions etc.
Here is a link to a complete course on Lynda.com that shows you how to create a Flash website/DVD/CD using Encore.
I hope this helps you.
Thanks for the reply. The problem with Encore is it doesn't allow for a scrolling chapter list while having the content playing in small block on the page. It's a presentation where the user needs to be able to browse chapters, read the speaks biography etc. while still having the presentation playing.
Ah I follow you now. The only way to accomplish this is using Flash Professional CS5. AND that would be a lot of work!
Trying to avoid going that route. Hoping there might be a solution in Flash Builder perhaps.
Thank for the replies though.