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It sounds like the Nikon footage going through QuickTime might be slowing things down. Try the suggestion here:
Also, make sure that you've installed the latest updates: http://adobe.ly/lsrkmJ
Thanks - lots of things to try there...
The container issue hit the spot I think. Updates made no discernible difference. But overall 3x-5x speed up.
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Did some more work with it with other material. Indeed, it seems to have been the culprit. Thanks Todd
Happy to help.
Of course, we're working on making our importers smarter to know to choose the faster path without you needing to do this manual hack of changing the filename extension.