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Actually, you both did!
You said one of the folders is obsolete? Why not delete it from inside RoboHelp? That would help avoid some of the confusion in and of itself.
If you have an end user looking at things, you are probably interested in the contents of the folder you see inside the !SSL! folder, as that one should contain your output files.
I don't see that obsolete folder in my Project Manager to delete it. Why is there a near identical set of folders outside of the !SSL! folder.
There is one thing I stress in all the classes I conduct. You never ever want to confuse your source with your output.
The files in one location are the source files. Files in the !SSL! location are the OUTPUT files. If the folder isn't showing in your RoboHelp Project manager, you are probably safe to delete it manually using Windows Explorer, because RoboHelp will only list what it knows about inside the Project Manager.
However, just to be on the totally safe side, I would suggest moving the folder to a different area until you are absolutely certain it (and nothing inside it) is needed. Once you are certain, then delete it for good.
You will also likely find some folders inside that !SSL! folder that don't exist in your source folder. These will have names like WHDATA, WGDATA, etc. They are there for supporting WebHelp.
I have a problem when I generated the project I didn´t got the SSL folder. I think it was because I generated into a knew folder with a new name - what did I do wrong. Kan I open the project whith another file insteed of the XPJ-file?